Protein Info for CA264_08680 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: glycoside hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF08239: SH3_3" amino acids 107 to 158 (52 residues), 44.5 bits, see alignment 3e-15 PF06347: SH3_4" amino acids 109 to 156 (48 residues), 30.6 bits, see alignment 4.8e-11 PF18348: SH3_16" amino acids 111 to 156 (46 residues), 45.9 bits, see alignment 7.8e-16 PF00877: NLPC_P60" amino acids 257 to 357 (101 residues), 70.6 bits, see alignment E=2e-23

Best Hits

KEGG orthology group: None (inferred from 54% identity to cao:Celal_1466)

Predicted SEED Role

"L-alanyl-gamma-D-glutamyl-L-diamino acid endopeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YY17 at UniProt or InterPro

Protein Sequence (392 amino acids)

>CA264_08680 glycoside hydrolase (Pontibacter actiniarum KMM 6156, DSM 19842)
MMKKNYLIFALGLLMACSPGKETTVSSASDLEPHIENVRQQYAPDKRVALFSVEQRGEVL
AGETNMPAAKAELLNKLKAENISYVDSIQVLPAADLEGKNFGVITISVANLRSDPKHPAE
LATQATMGTPVQVYKKKSGWYLVQTPDKYLAWVDASGVTLMDKTTFDAWQKSPKLLYTKP
YGFAYEGTSTAGGTVSDMVYGDVLALKQKQGNFYEVSFPDGRTGFVPASEAVKYDEWVAS
RQPNGDNLVSTSKQLLGLPYLWGGTSFKGVDCSGFTKTVYFMNGLVLPRDASQQVHIGEL
VDTSNGWDNMQPGDLLFFGVPATDDKSERVVHVGMWIGGDQEFIHSAGRVRISSMNPSAA
NFDESELKRFLRAKRVTPEDAVVDLRETNLYQ