Protein Info for CA264_08215 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 973 PF08455: SNF2_assoc" amino acids 188 to 481 (294 residues), 32.8 bits, see alignment E=9e-12 PF04851: ResIII" amino acids 515 to 669 (155 residues), 31.6 bits, see alignment E=3.7e-11 PF00176: SNF2-rel_dom" amino acids 519 to 797 (279 residues), 231.7 bits, see alignment E=2.5e-72 PF00270: DEAD" amino acids 542 to 670 (129 residues), 25.5 bits, see alignment E=2.5e-09 PF00271: Helicase_C" amino acids 807 to 916 (110 residues), 75.1 bits, see alignment E=1.3e-24

Best Hits

KEGG orthology group: None (inferred from 51% identity to phe:Phep_0433)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRD6 at UniProt or InterPro

Protein Sequence (973 amino acids)

>CA264_08215 DNA helicase (Pontibacter actiniarum KMM 6156, DSM 19842)
MIQEKQDFEPFKAATVHEVLPINGSLGANAEETLSSTSPEKETIIVIGKHRYYNLFTAQL
VTCPRSSTGELKSPFTVLNTLDLVWSTQQPEELKFYAAISKLQGFYEASGTDTAVLKALI
RNPFQYPFYLHDSNITEKISPRSISPVQVSQAATDGSIHVSQKGLLYTTSMELSIDGAYC
PLSRISVQYDQFVVLDTDWYLCANPHLLQAIAYFKRHGNSVTLPRAAFLQFRKEVLAEME
DHVHVAHTYLKAATPAQLATGGFGHAPEKRLYLSESGSYVKLTPVMKYGETEIPVLSRRQ
IYAQDKAGKLIGVARDGEAEDAFTALLLRQHPDFEEQLETPLLYFYLHKNRFLDEDWFLC
AFEVWQSQQITVLGFNDLQGNRLNQHKAVISIQVLSGVNWFNAQVHVRFGRQEASLQQLY
RSVKDKSRYVQLGDGTKGILPEEWLQKLERYFRAGEVADETTLRIPKVSYAALSELFEAH
MLAEEVREELNRYQVQLSDLAAIKPVSVPAGLHAELRPYQLQGLSWLSFLDSLNFGGCLA
DDMGLGKSIQIIAFILHLKAKSAQNAHLLLVPTSLIPNWVAEMQKFAPSLSLLILQGSGR
PKSTAHFAGYDVVITTYGTLVADIAYLKEYQFSYVFLDESQNIKNPLSQRYKAARLLKAR
NRVAISGTPLENSTFDLYAQLSFACPGLLGTKQFFRNTYAIPIDKFKNKRSARALQDKIS
PFILRRTKKEVATELPEKTEVVLHCEMGSEQRTVYEAYEREFRDYIAARGEDEIQKNAMH
VLRGITRLRQLCNAPQLIGEDKVASSKIAILLEQIRHISRHHKVLVFSQFVSMLDLIRKE
LEKEGLGYALLTGSTRDRGEVVNRFQEDEATRVFLISLKAGGTGLNLTAADYVFLVDPWW
NPAVENQAIDRSYRIGQKNNVIAVRLICPDTVEEKILQLQQNKAQLASDLVGTGDDFFRS
LSKAALLALATNN