Protein Info for CA264_08145 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: deoxyribodipyrimidine photo-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 20 to 33 (14 residues), see Phobius details PF00875: DNA_photolyase" amino acids 3 to 163 (161 residues), 168.2 bits, see alignment E=1.6e-53 PF03441: FAD_binding_7" amino acids 251 to 401 (151 residues), 244.5 bits, see alignment E=6.9e-77

Best Hits

KEGG orthology group: K01669, deoxyribodipyrimidine photo-lyase [EC: 4.1.99.3] (inferred from 56% identity to rbi:RB2501_13709)

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRC2 at UniProt or InterPro

Protein Sequence (433 amino acids)

>CA264_08145 deoxyribodipyrimidine photo-lyase (Pontibacter actiniarum KMM 6156, DSM 19842)
MLLFWFRRDLRLHDNAGLFHALTSGKLVLPLFILDSAILDKLENGKDARVTFIYNTLLEL
HRKLEAQGSTLLVRHGKPLEVFKELMQKYNVEAIYTNRDYEPYARHRDQEIARLAQQQGV
AFQSFKDQVIMEPGEIMTLGGTPYKVYTPFKNAWKKAFTPTLAASYPTHTHFGHFYQHPK
TPIPALQDVGFALSDLLVPRADFSANTLQAYEQTRNLPAKNATSHLGPHLRFGTVSVREA
VRAALEHSDVWLQELIWREFFLQLLFHFPESAAVSFAPKFRHIVWRNNEEEFEKWCEGKT
GFPLVDAGMRELNATGFMHNRVRMVVASFLVKDLLIDWRWGEAFFAEKLLDYDMASNVGN
WQWAAGTGADAQPYFRIFNPTSQAAKFDPEQAYIKRWVPEFGTAAYPQPMVDHSMARDRA
VAAYKKAIALTEA