Protein Info for CA264_08080 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: gliding motility-associated ABC transporter ATP-binding subunit GldA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 TIGR03522: gliding motility-associated ABC transporter ATP-binding subunit GldA" amino acids 1 to 302 (302 residues), 463.6 bits, see alignment E=1.6e-143 PF00005: ABC_tran" amino acids 18 to 162 (145 residues), 102.6 bits, see alignment E=2.8e-33 PF13304: AAA_21" amino acids 143 to 191 (49 residues), 27.6 bits, see alignment 2.8e-10

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 61% identity to sli:Slin_3471)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRD5 at UniProt or InterPro

Protein Sequence (304 amino acids)

>CA264_08080 gliding motility-associated ABC transporter ATP-binding subunit GldA (Pontibacter actiniarum KMM 6156, DSM 19842)
MSVEVKNLSKVYGGQRAVDDISFTVERGQILGFLGPNGAGKSTTMKVATCYLPPSAGTVL
VAGHDVVQEPIAVRRSVGYLPEHNPLYLDMYVHEYLQFVASVYGLKGKFARARVQEMVEL
CGLTLEQGKKIGALSKGYRQRVGLAQALVHDPQVLILDEPTTGLDPNQIVEIRSLIKRIG
QDKTVIFSTHIMQEVAAICDRVVIINRGKLVANSDVASLQTAGRDEKVTLVEFEAPIEAA
ALQAIPGVLRVELAQNHTYRITSSKAADVRSNVFRIAAERNWPLVGLRQEENSLEQIFQQ
LTKN