Protein Info for CA264_07615 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: Two-component hybrid sensor and regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1507 PF18947: HAMP_2" amino acids 163 to 226 (64 residues), 45.6 bits, see alignment (E = 1.1e-15) amino acids 255 to 318 (64 residues), 38.2 bits, see alignment (E = 2.2e-13) amino acids 347 to 409 (63 residues), 29.6 bits, see alignment (E = 1.1e-10) amino acids 438 to 502 (65 residues), 36.2 bits, see alignment (E = 9.3e-13) amino acids 531 to 594 (64 residues), 32.1 bits, see alignment (E = 1.8e-11) amino acids 623 to 686 (64 residues), 32.9 bits, see alignment (E = 1.1e-11) amino acids 715 to 778 (64 residues), 34.2 bits, see alignment (E = 4e-12) amino acids 807 to 870 (64 residues), 34.1 bits, see alignment (E = 4.4e-12) amino acids 898 to 962 (65 residues), 34.2 bits, see alignment (E = 3.9e-12) amino acids 991 to 1050 (60 residues), 27.9 bits, see alignment (E = 3.6e-10) amino acids 1083 to 1146 (64 residues), 54.9 bits, see alignment (E = 1.4e-18) PF00672: HAMP" amino acids 268 to 318 (51 residues), 35.4 bits, see alignment (E = 2.2e-12) amino acids 360 to 409 (50 residues), 33.1 bits, see alignment (E = 1.1e-11) amino acids 452 to 502 (51 residues), 37.6 bits, see alignment (E = 4.6e-13) amino acids 544 to 594 (51 residues), 38.8 bits, see alignment (E = 1.9e-13) amino acids 636 to 685 (50 residues), 33 bits, see alignment (E = 1.2e-11) amino acids 728 to 778 (51 residues), 27 bits, see alignment (E = 8.9e-10) amino acids 820 to 870 (51 residues), 36 bits, see alignment (E = 1.4e-12) amino acids 912 to 962 (51 residues), 36.3 bits, see alignment (E = 1.1e-12) amino acids 1004 to 1053 (50 residues), 28.8 bits, see alignment (E = 2.6e-10) amino acids 1099 to 1146 (48 residues), 26.7 bits, see alignment (E = 1.2e-09) PF00015: MCPsignal" amino acids 1224 to 1406 (183 residues), 136.4 bits, see alignment E=1.9e-43

Best Hits

Predicted SEED Role

"Putative SigmaB asociated two-component system sensor protein" in subsystem SigmaB stress responce regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YR04 at UniProt or InterPro

Protein Sequence (1507 amino acids)

>CA264_07615 Two-component hybrid sensor and regulator (Pontibacter actiniarum KMM 6156, DSM 19842)
MALGKNLKLSKDKLISDVEAKEEQKGASSAKADKGDSTTAVPDAPVKADAPAAKEQVAGA
AAPAKPAGNPPDIKKKRQGKLPSNPDYISDQLNRVLYALDAFKKGDVSVRLTKQNDDIFA
DIAEAYNSMVEMIGGVGGEVSRISKVAGVEGNLKARASAESASGFWKDMINNINGLVDSI
AVPVLEVGKVLKNISRGNLDETFQIPVSGDFKVMAETINRTIDNLNLFAGEVTRVALEVG
TEGKLGGQASVPNVAGIWKDLTDNVNTMASNLTSQMRDIANVATAVAKGDLTQKVSVDVR
GEFAQLKDNVNQMVDSLNIFADEVTRVAREVGTEGKLGGQARVPNVGGVWKDLTDNVNTM
ASNLTSQVRDIANVATAVAKGDLTQKVTVNVKGEIADLKDIINQMVVSLNIFAGEVTRVA
REVGTEGKLGAQANVPRVEGTWKELTDNVNTMASNLTSQMRDIANVATAVAKGDLSQKIT
VDVKGEIAELKDILNEMVDRLNVFGAEVTRVAREVGTEGILGGQANVPNVAGIWKELTDN
VNYMASNLTSQVRDIANVATAVAKGDLSQKVTVNVKGEIAELKVNINQMVDSLNIFADEV
TRVAREVGTEGKLGGQATVPNVGGVWKELTDNVNTMASNLTSQVRDIANVATAVAKGDLA
QKVSVDVKGELGELKENINQLVDYLNIFAGEVTRVALEVGTEGRLGGQANVPNVAGVWKD
LTDNVNTMASNLTTQVRGIAKVATGVAKGDLTQKITVEARGEIAELKENINFMVDSLNIF
GDEVTRVAREVGTEGKLGGQANVPNVGGTWKDLTDNVNSMASNLTSQVRDIAKVATAVAK
GDLTQKVSVEARGEILDLKENLNQMVDSLNVFADEVTRVAREVGTEGKLGGQANVPKVRG
TWKELTDNVNTMASNLTLQVRDIAKVSTAVAKGDLTQKVSVDVKGELGELKENINRMVDS
LNIFAGEVTRVALEVGTEGKLGGQANVPNVAGVWKDLTDNVNTMASNLTTQVRGIVKVVT
AVSKGDLTQKLTLEAKGEVAELADTINNMVVDLNRLAGEVSRVARVAGVEGKLTERAALQ
GVGGSWKELVDTLNDLLESIVTPVLDVSRVVRAISEGDLTQKVEAQTAGDILDMANALNL
AVDNLNALLGEINDSSLVVGTSSEEMASKGLEMNKITLDVALAMQQMAEGAQNQALKTDQ
AFKLIEEIMKATKETANRAEVVNKSAKVGEETSQHGLKTVAEVVKNMEEISSSAAQTART
IEVLSTRSQEISKSLGVITDIAAQTNLLALNAAIEAARAGEAGRGFAVVAEEIRKLAEGS
RKSASEISTLVDDVKKDTASAATAISTMEGRVMKGKNATFEASGAFKNIASSSGETLRTA
QDILTATEIQKSSIGDVVKYVEEVVAIAEQTASGTQQVASTAKQLSGSMQELTSSSQNLN
DIAADLQVSISAFKLIDGNLVFINRKNLMTSVPANSRYERSQTGNTRQATRSSLAKNGSA
KKDGSKA