Protein Info for CA264_07290 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: mechanosensitive ion channel protein MscS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details PF21088: MS_channel_1st" amino acids 138 to 178 (41 residues), 38.7 bits, see alignment 1.1e-13 PF00924: MS_channel_2nd" amino acids 179 to 245 (67 residues), 57.7 bits, see alignment E=1.5e-19 PF21082: MS_channel_3rd" amino acids 253 to 337 (85 residues), 47.5 bits, see alignment E=2.9e-16

Best Hits

KEGG orthology group: None (inferred from 49% identity to slt:Slit_1240)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQV9 at UniProt or InterPro

Protein Sequence (362 amino acids)

>CA264_07290 mechanosensitive ion channel protein MscS (Pontibacter actiniarum KMM 6156, DSM 19842)
MSDFLDRVYLHNSVQTYLIALGFILVGFLVISFFKKSVLTRIARLTQKTSTSIDNFLVES
LARFGVPALYIYVVYLGLNYLVLSERVSNIIEFATIVAVTILVIRLLSSTILLVLRGYIH
RQENGEEKVKQLGGVMLIINIMIWGLGFLTLLDNLGYDVTTVVAGLGIGGIAVALAAQNI
LGDLFNYFVIFFDRPFEIGDFIIIDDKMGVVENIGIKTTRLKSLSGEQLVFSNSDLTNSR
IHNYKQMQQRRVLFKIGVIYQTPYEQVQAIPRLLRQIVEEQEPVRFDRAHFSSYGDSSLD
FEVVYYVLSSEYNTYMDVQQQINMRIFQEFSKRGIDFAYPTRTLFVVNEEQGSENHQPVR
AL