Protein Info for CA264_07180 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF02321: OEP" amino acids 37 to 233 (197 residues), 88 bits, see alignment E=3.6e-29 amino acids 257 to 443 (187 residues), 85.9 bits, see alignment E=1.6e-28

Best Hits

KEGG orthology group: None (inferred from 56% identity to phe:Phep_4260)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXS3 at UniProt or InterPro

Protein Sequence (447 amino acids)

>CA264_07180 transporter (Pontibacter actiniarum KMM 6156, DSM 19842)
MSKTSRLRGLTKRMCAVLLLLGLSGAATAQDLKQLTLQEAISLGVENSKQLQLSHAKVEE
AVARYKQAKDKALPTGSASYTYNHAEIPTTTFKMSEEGEPYYLPKRADAFIGGVSLQEVL
FSGNRLRYAQESTSLLTQVAKLDTEKDKEEIAYNITNAYINLYKLQQSKKVLEQNLEDVD
RQIKRAQRFFEQGLVTKNDVLRFQLQRSNVELSRVDLETNRKIVVYNLDLLLGLPEETDL
VAQEAQAPAELAATFSAYIDSALVNRPELRALNLQGQVADNQVKSVRAEKLPTVVLGADA
HYLNPNGAFVPAKNNYLAPFTIGATVAWNFDQLWLNKHKVQEAKVQKTEVELSKLTAMDM
VKTEVNQSYQNYLMAQERVNILQTAIAQAQENDRILESQYQNKVATATDRIDAETQLFQQ
LVNLELAKADATLAYYTLLKSTGNIIK