Protein Info for CA264_06720 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF14322: SusD-like_3" amino acids 23 to 206 (184 residues), 42.3 bits, see alignment E=1.1e-14 PF07980: SusD_RagB" amino acids 291 to 577 (287 residues), 142.5 bits, see alignment E=2.3e-45

Best Hits

KEGG orthology group: None (inferred from 46% identity to zpr:ZPR_0702)

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YY65 at UniProt or InterPro

Protein Sequence (578 amino acids)

>CA264_06720 RagB/SusD family nutrient uptake outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MNRTYLTSVFALLAVLFSACEKDFLDRPPKDKVDAEFFFKTATDLEVATNAFYTMLPTTE
VYTEDNASDNILPLIASERVRGGRIVPTTRGSGGWSWGYLRDINFFLQNYQRVPDEAAKR
KYGGIARFFRAYFYFEKVKRFGDVPWYSKVLEAGDPDLYKGRDSRKVVIDSVMADINYTI
ENIPAEVKLNRITKYTALLLKAKIALYEGTFRKYHGLGDYETLLQEAAEASEALINSGAY
SLFTTGGPNAAYRELFARNNQDATETILARDFDSELGQHKLGYLMTAPTQGAWGITKDVI
NSYLMKDGSRFTDQPGYETMGFYEEMQNRDPRLTQTTAGPDFTVYGENTPEPVNLTGTTT
GYRVIKALPSRDQWNASYFDIIIFRYAEALLILAEAKAELGTLTQHDLDITINRLRDRVN
MPHLILAQANANPDPYLAAMYPNVDQGANKGVILEIRRERRIEMLNEGLRWDDLMRWKEG
DKIEQPMLGIYFSGLGAHDFNNDGTPDVYLHDGNASGAPKGVSTIINVQQRPLTNGSSGN
LAPFQLGGFFDESRDYYYPIPIEDLRLNPNLEQNPNWK