Protein Info for CA264_06410 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: YggS family pyridoxal phosphate enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF01168: Ala_racemase_N" amino acids 3 to 223 (221 residues), 65.8 bits, see alignment E=2.4e-22 TIGR00044: pyridoxal phosphate enzyme, YggS family" amino acids 18 to 223 (206 residues), 191.9 bits, see alignment E=6.1e-61

Best Hits

KEGG orthology group: K06997, (no description) (inferred from 60% identity to phe:Phep_2922)

Predicted SEED Role

"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQI2 at UniProt or InterPro

Protein Sequence (227 amino acids)

>CA264_06410 YggS family pyridoxal phosphate enzyme (Pontibacter actiniarum KMM 6156, DSM 19842)
MSIKDNILYFDEQLRPTPCRLVAVSKTHPVTAIKEAYDAGHRLFGENKVQELIDKYALLP
HDIAWHLIGHLQTNKVKYIAEFIDMIQSVDSLKLLKEINKRAEMFGRTLPINCMLQIAIA
DEETKYGMSCDEAEALLQSEEYRGMKYIRITGVMGIATNTEDEQKLRGEFRTLRACFTRL
KETFFFANGDFKEISMGMSADWELALEEGSTMIRVGSGIFGARDYSK