Protein Info for CA264_06140 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: MerR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 PF13411: MerR_1" amino acids 13 to 82 (70 residues), 81.5 bits, see alignment E=4e-27 PF00376: MerR" amino acids 14 to 51 (38 residues), 30.1 bits, see alignment E=3.4e-11

Best Hits

KEGG orthology group: None (inferred from 64% identity to chu:CHU_1445)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQ95 at UniProt or InterPro

Protein Sequence (115 amino acids)

>CA264_06140 MerR family transcriptional regulator (Pontibacter actiniarum KMM 6156, DSM 19842)
MPYKEKEIEKQYYTIGEVAGMFDVAPSLIRFWETEFEQLKPKKNKKGNRQYTPKDIETLR
TVYHLVKERGYTIQGAKEVMKNKPVQAKDKMEMVESLVKVRAFLQGIKDQLNTKA