Protein Info for CA264_06055 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02646: RmuC" amino acids 127 to 424 (298 residues), 346.9 bits, see alignment E=4.2e-108

Best Hits

Swiss-Prot: 39% identical to RMUC_ECOLI: DNA recombination protein RmuC (rmuC) from Escherichia coli (strain K12)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 47% identity to aas:Aasi_1321)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQ75 at UniProt or InterPro

Protein Sequence (441 amino acids)

>CA264_06055 DNA recombination protein RmuC (Pontibacter actiniarum KMM 6156, DSM 19842)
MEIIVGIAAFLGGLVVAFLALRGKLNSLQQVANQAAVMQGVLEGQAKQRSQEAEQLKSLL
REAQTETLELTNALTKTETDYEHLKSRLQEQGRELELLREKFLQQFQSISNQVLMTNAEH
FNKASSENLERILSPLKDRIKEFEVKVEQTYEKSLKDSVSLKEQITQLAALNQQMSQDAI
NLTKALKGESKTQGNWGEYLLESLLEKSGLRKGVHYEREEVRQNDESKVYRPDVIIRLPE
GKHLIIDSKMSLVAYEAYCSCEDEHQQEVYLRGHINSVRTHFSDLGRKNYHRLNGINSPD
FVLMYIPIEPAFNLAVQHDHDLFIDAFDKNIVLVTTSTLLATLRTVAGVWRQEDQKRNVL
KIAEESGKLYDKFVGFVDDLKTVGKHLENSQSSYNSAMNKLTEGRGNLIRRVEILRELGA
KTSKTLDENLLQEAQLTEETE