Protein Info for CA264_05910 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: RNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 PF00270: DEAD" amino acids 28 to 193 (166 residues), 174.9 bits, see alignment E=2.4e-55 PF04851: ResIII" amino acids 42 to 188 (147 residues), 28.7 bits, see alignment E=2.4e-10 PF00271: Helicase_C" amino acids 230 to 338 (109 residues), 110.1 bits, see alignment E=1.4e-35 PF03880: DbpA" amino acids 455 to 525 (71 residues), 70.1 bits, see alignment E=2.7e-23

Best Hits

KEGG orthology group: K05592, ATP-dependent RNA helicase DeaD [EC: 3.6.4.13] (inferred from 58% identity to cdf:CD0761)

Predicted SEED Role

"DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQ77 at UniProt or InterPro

Protein Sequence (606 amino acids)

>CA264_05910 RNA helicase (Pontibacter actiniarum KMM 6156, DSM 19842)
MNKIRFEELPLSPEVQRAIADMGFEEASPIQTEAIPVVLSGKDIIGQAQTGTGKTAAFGI
PTIETVDPSDRSVQALILCPTRELAIQVSGEIQKLAKYKQGISVVPIYGGQSYDRQLRAL
KQGVQIVIGTPGRVMDHIQRGTLVLDNVNKIILDEADEMLDMGFREDIEFVLERIPEDRQ
TIFFSATMSKPIMEMTKRYQTDPVLVKVVHQELTVTNIDQAYFEVRNSAKQEVLSRLLDM
YNLKSAIIFCNTKRMVDDLVTGLQARGYFSDALHGDLNQNQRSAVMNKFRNGTLEILVAT
DVAARGLDVENVEAVFNYDLPQDEESYVHRIGRTGRAGKSGKAFSFVGGRSDGYKLKDIM
RYTKAKIVLQQVPSLEDVNEIRTNMFFDKVKEVLEKGHLAKHVARIERFVNETDGYTPLD
VASALLKMSMKEAKVKEKGADAEKGLSAAKEGMDRLFITIGKKDRVHPRDLIDLLAQNSS
IPEGRVGDIDLYDKFSFVEVPTEYTAEIVENIGRVEYDGRMVIVEKSQKKGSGPKEGGED
FGFGGGGDRDRDRGGRRSGGGFRGGDRDRDRDRGGFRGDRRGGGDRDRDRGGDRRSGGGG
FRKKRF