Protein Info for CA264_05610 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: rRNA methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 PF17125: Methyltr_RsmF_N" amino acids 3 to 85 (83 residues), 78.2 bits, see alignment E=8.3e-26 PF01189: Methyltr_RsmB-F" amino acids 97 to 288 (192 residues), 139.9 bits, see alignment E=1.3e-44 PF13636: Methyltranf_PUA" amino acids 402 to 450 (49 residues), 66.4 bits, see alignment 2.9e-22

Best Hits

KEGG orthology group: None (inferred from 52% identity to bfr:BF3726)

Predicted SEED Role

"tRNA and rRNA cytosine-C5-methylases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YQ23 at UniProt or InterPro

Protein Sequence (466 amino acids)

>CA264_05610 rRNA methyltransferase (Pontibacter actiniarum KMM 6156, DSM 19842)
MQLPVSFTERMQRLLGLQEYQQFLNALQQTPPVSIRVNKAKATAAAGLAAVPWAAAGRYL
PVRPSFTLDPAIHAGAYYVQEASSMFVEQALRQAVNLEQPLQVLDLCGAPGGKSTHLASL
ISEDSLLVSNEVIRSRASILAENVAKWGSGNVLVTSNDPRDFGRLPDFFDVMVVDAPCSG
EGMFRKDPQAVQEWSEENVKLCAQRQQRILMDVWDALKPGGLLVYSTCTWNEQENEENVA
WLSEQEGVESIRLELQPEWGVVPTQLGGVEGYRFYPHRVQGEGFFMAVVRKAGEEAAISH
GKSKKKKYKLTPAGKKEKALVENWLLEPEHYTFLQYGEVITALPAYLFEAADEVYQHLYV
VYAGTELAEVKGKKLKPLQGLALSQQLNKAAFQVAELDLEQALRYLRKEDISLGTNGNDW
LLLQYKGLPLGWAKQIGSRVNNYYPKEWRIRMDLPQELPETTVLAS