Protein Info for CA264_05245 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1178 PF13175: AAA_15" amino acids 1 to 305 (305 residues), 64.7 bits, see alignment E=2.5e-21 PF02463: SMC_N" amino acids 3 to 1167 (1165 residues), 193.4 bits, see alignment E=7.7e-61 TIGR02168: chromosome segregation protein SMC" amino acids 3 to 1174 (1172 residues), 1061.8 bits, see alignment E=0 PF13304: AAA_21" amino acids 26 to 88 (63 residues), 29.7 bits, see alignment 1.3e-10 amino acids 948 to 1146 (199 residues), 32.1 bits, see alignment E=2.4e-11 PF06470: SMC_hinge" amino acids 524 to 629 (106 residues), 63.1 bits, see alignment E=6.7e-21

Best Hits

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YPZ3 at UniProt or InterPro

Protein Sequence (1178 amino acids)

>CA264_05245 chromosome segregation protein SMC (Pontibacter actiniarum KMM 6156, DSM 19842)
MQVSKLEIKGFKSFGDRVVINFDNGITGIVGPNGCGKSNIVDAIRWVLGEQKTRNLRSDK
MENVIFNGSKTRKPVQMAEVSITFDNNKGILPTEYSQVTVTRKYYRNGDSEYMLNGVTCR
LKDINELFLDTGIGSDSYAIIELKMVDEILNDKENSRRLLFEEAAGISKFRVRKKQTLKK
LEETDADLERVEDVLHEIGKNMKTLERQAKQAVKYFNLKDDYKKHSLEFARRNISQYQQA
LERLEQDVQQEGSLKEQYIAAVTTSEEAIAEQKEQLNETQERLSEMQRSMQVQTAKLRQL
ENDIKLKSERSTYLKERMQQLRQQISQDTANVEHTQESILELRDELMTVQESFAEAEEQV
AAMKEQLQESNEQKEALQETYQDLVQQQKTKQNEVYQLNKSLEISQVQIQNINQELERLQ
QQQMTADEDGRLLQEQLQEAQQVLEERTSELVRLQAKEETLQQSIEATEANMVELKGQLV
ELNRALDAKQNQYNLTKSLVENMEGFPEAIKFLSKSDSWQKPAPLLSDLLACKPDYKPLI
ESYLEQYMNYFVVDELQDAVAAVELLKAENKGRANFIILSEIEELEPTATFSEGSMTAAY
EVVSAEKKYSSLMKYMLRNVYISDDAEDGLYDSEYKTIILKDGSAIRKPLSLSGGSLGVF
DGNRLGRKQNLEKLAEEVAELQEQVELLQSRINTQNQILQNHRNESEKDTIKGLEKEVSK
LQQDLLTVRIKHEQHQQNIRNFDQKRDELHERLVELREQSMEVSPQAEADMKELQRLEQE
IVLYTSNLERQQEQIAVVSGRYNQENIQYHQLKNRFASLQQEISYKQKSVETNQERIEGL
KQELVKSEQEIEEAETFIQNNQEVVESMNEARQEYAHELEEIEKEYFTLRGDLDEKEKSI
REMQRKRQNSDELLMRMQQAKTDTQLKLVAIKERLAAEFNISDEDFASPVPEEELLIPLS
NEELSEHIATVKGQLDKMGPVNAMAAEAYTEIEERDKFITEQRNDLVNAKNALIDTINEI
DTVAKEKFMDSFNQIKDNFKHVFRSLFTEEDNCDLVMSDPKNPLEAKIEIMAQPKGKRPL
TINQLSGGEKTLTAISLLFAIYLLKPAPFCIFDEVDAPLDDANIDKFNNIIRKFSNDSQF
IVVTHNKRTMSSTDVMYGITMIEAGISRVIPVDLRQIA