Protein Info for CA264_04835 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 641 PF00005: ABC_tran" amino acids 18 to 187 (170 residues), 90.9 bits, see alignment E=3.5e-29 amino acids 339 to 468 (130 residues), 69.6 bits, see alignment E=1.3e-22 PF12848: ABC_tran_Xtn" amino acids 226 to 310 (85 residues), 101.3 bits, see alignment E=7.8e-33 PF16326: ABC_tran_CTD" amino acids 569 to 628 (60 residues), 41.6 bits, see alignment 3.5e-14

Best Hits

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 62% identity to mtt:Ftrac_1356)

Predicted SEED Role

"COG0488: ATPase components of ABC transporters with duplicated ATPase domains" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YPN6 at UniProt or InterPro

Protein Sequence (641 amino acids)

>CA264_04835 ABC transporter ATP-binding protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MISINNLNFHFGSRIMYEDASLHIKPKDKIGLIGLNGTGKSTLLRLIVGEYSPDSGSIQM
SKETSIGFLNQDLLSYETHESILSVAMQAFGEAVHLQEQIDQVLVAFENNFHDNLVDKLA
TLQERFEALGGYTMQAEAEAILEGLGFTTEELQQPLASFSGGWRMRVMLAKILLQKPSLL
LLDEPTNHLDLPSIKWLESYLERYEGAVVIVSHDREFLDRTTNMTVEVSGAKLNVYAGNY
SFYLEEKALRNEIQKGAYENQQAQIKQAERFIERFKAKATKAKQAQSRQKMLDRMDRIDD
VAPDAAKVNFSFKFNIQPGRHILRLEHMSKAYGDKVIFRDTNVHIERGDKIALVGANGKG
KSTLLRIIAGTEPVKGKRELGHNVILSFYAQHQLESLNVENDMLTELQQAGSGKTEVELR
TLLGSFLFTGDEVYKKIKVLSGGEKSRVALAKTLISEANFLMLDEPTNHLDMQSVNILIQ
ALEQYEGTFVVISHDRYFVENVATKIWYIEDYQLKEYPGTYHEYEAWQEKREKEVKKDTA
NTPAPKAEKQPREKSEFTQLSNQLKQVNKQVNEVEKEVQQLEQQLAAQEKHLADPEVFGD
VEKLQKATQDFEVIKNKLDKKQEQWEELMLEAEELEIKMAE