Protein Info for CA264_04400 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF02470: MlaD" amino acids 41 to 115 (75 residues), 69 bits, see alignment E=3.4e-23

Best Hits

KEGG orthology group: K02067, putative ABC transport system substrate-binding protein (inferred from 51% identity to phe:Phep_0795)

Predicted SEED Role

"ABC transporter, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YPJ2 at UniProt or InterPro

Protein Sequence (338 amino acids)

>CA264_04400 ABC transporter permease (Pontibacter actiniarum KMM 6156, DSM 19842)
MNTAENKRAIMVGMFVLIAIVIFVVGILTLGGQQKRFIESITVKTVFDDVEGLKVGNNVW
FSGVKVGTVKNIDFYGESQVAITMSIEQEAQKYIRQNSKARISSESLIGNKIIEIFGGTP
AAEPIEDGDILASEANLNTDDIMKTLQENNKNLTTITGNFGEISDRLVRGEGTIGTLLTD
STLAQNFKSLIASLEQTSQNTVQASRDLSRFTNKLNTKGSLATELLTDTTVFNKLEETMA
QLENASQSAAQMTQNLQEASAKLNNENNAVGVLLSDEQFANQLQRTMQNLETSTEKFDEN
MEALQSNFLLRGFFRKREKAQRKAAEEAAEQAEQQQNQ