Protein Info for CA264_03720 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 77 to 106 (30 residues), see Phobius details amino acids 151 to 166 (16 residues), see Phobius details amino acids 174 to 198 (25 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details PF05661: DUF808" amino acids 3 to 295 (293 residues), 356 bits, see alignment E=7.9e-111

Best Hits

Swiss-Prot: 41% identical to YEDI_ECOLI: Inner membrane protein YedI (yedI) from Escherichia coli (strain K12)

KEGG orthology group: K09781, hypothetical protein (inferred from 73% identity to sli:Slin_2760)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YP04 at UniProt or InterPro

Protein Sequence (305 amino acids)

>CA264_03720 ABC transporter (Pontibacter actiniarum KMM 6156, DSM 19842)
MATGLLALLDDISALVKVSAASLDDVPTQVAKTTGKVSGIVIDDTAVTPKYVVGLDPSRE
LSIIYQIAKKSLLNKLLLLSPAALILGFFAPWAIPPILMLGGAYLCFEGYEKVHSMFATH
HADTPQSAGDDLKVITPEELEKTRVKSAVRTDLILSGEIVAITYATVADKPLVSQIAVML
AVAIFITIAVYGFVGLVVKADDIGLHMAKENHHHRVRAIGHGIVKFMPHFLSILGYVGTA
AMLWVGAEIIAHGIPFTSHALHELEVALANVPALAWLAKAFVCAIGGLILGGVIEKVVVA
ARKLF