Protein Info for CA264_03600 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ATP-dependent helicase HrpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 848 TIGR01970: ATP-dependent helicase HrpB" amino acids 13 to 846 (834 residues), 953.7 bits, see alignment E=5.1e-291 PF04851: ResIII" amino acids 17 to 168 (152 residues), 26.9 bits, see alignment E=8.6e-10 PF00270: DEAD" amino acids 23 to 171 (149 residues), 40.8 bits, see alignment E=4.1e-14 PF00271: Helicase_C" amino acids 219 to 346 (128 residues), 45.6 bits, see alignment E=1.5e-15 PF08482: HrpB_C" amino acids 702 to 834 (133 residues), 184.3 bits, see alignment E=2.6e-58

Best Hits

Predicted SEED Role

"ATP-dependent helicase HrpB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YP23 at UniProt or InterPro

Protein Sequence (848 amino acids)

>CA264_03600 ATP-dependent helicase HrpB (Pontibacter actiniarum KMM 6156, DSM 19842)
MPTTDLLHHLPDLPVKEALPRLLQVLNTSNRAVLEAPPGAGKTTLVPLALLEADWRGDGK
ILVLEPRRLATRAAAERMADLLGEPVGQTVGYWVRMDHKVSRKTRVEVVTEGILTRIIQD
DPALEGVAAIIFDEFHERNLQADLGLALALDAQAVLRPDLRLLVMSATLDATAIGQWLQA
PVVQSEGRLFPVQTHFLSPAEVAAAGNYPSQRLATLTPKAIRQALSQEAEGDLLVFLPGM
GEIKKVAQQLENTLGPAIELHLLHGDLPLSKQVAAIQPSPKGKRKVVLATSIAETSLTIE
GVTIVVDGGFARVPRFTPRTGLTTLATVPVSQAGADQRRGRAGRLGPGVCYRLWSTADQM
QLPPRQSPEILDADLTGLVLELALWGVKDATTLNWLDSPPAAALALAKDLLQRLEALDAA
GNPTPHGKALASLGIHPRLGHLVMRGHELGFGATACALAALLSERDVLKPLQLGWGEGIP
DLQLRLELIAGKSPVTPGFVVDENALRRVKEQAQNLRQRLRDATGNLHPELAGLLTALAY
PDRLAQREAPGRVRLVSGQRASLATELFGEAEFYSIAHLDLGKQPRILLAAPLAKSDLLE
HFSEQVEVLQEVRWHEGSQQVVARHLTRLGALLVEESTVSKPDADKVAAALLQALQEKGV
ERLPWSEEALRTRQRLAFLHRLEPENWPDTSDAALAASMDSWLAPHLHGLRTLDQVARLD
FKEILLAELAWEQRQEMERLAPSHLQVPSGSRIALDYSDAASPVLAVRLQEVFGLLDTPR
VGGGKVPLLLHLLSPASRPVQVTRDLRSFWSNGYFEVRKDLRGRYPKHHWPDDPLTAPPT
RGTKKRPG