Protein Info for CA264_03135 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 43 to 62 (20 residues), see Phobius details PF01183: Glyco_hydro_25" amino acids 80 to 253 (174 residues), 173.4 bits, see alignment E=3.1e-55

Best Hits

KEGG orthology group: K07273, lysozyme (inferred from 46% identity to cpi:Cpin_0797)

Predicted SEED Role

"Lyzozyme M1 (1,4-beta-N-acetylmuramidase) (EC 3.2.1.17)" (EC 3.2.1.17)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YNU8 at UniProt or InterPro

Protein Sequence (275 amino acids)

>CA264_03135 hydrolase (Pontibacter actiniarum KMM 6156, DSM 19842)
MAANTKPPLKKAPAEKPFKVPAKRAVRTAKPRKKQQQQPPRRFWAGLAILLGIILLVLYV
EYFVDKPEPVWPEGHTVYGVDVSHYQKEVDWQKVRENEVVFAFVKATEGVSLKDRKYEEN
WAGAGAAGIIRGAYHFYLPYLNPEEQAQHFVSSVQLQSGDLPPVLDVEVRGRKPVAQLRQ
DLKVWLEKVENAYGIKPIIYTNFKFYEDYLAGHFDSYPLWIAHYRVPRLQIEKSNTRKLA
FWQHTDGGSIEGITGSVDCNVFYGSMRDLRGVCIK