Protein Info for CA264_02430 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: glucoamylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 transmembrane" amino acids 582 to 598 (17 residues), see Phobius details PF19291: TREH_N" amino acids 5 to 144 (140 residues), 60.7 bits, see alignment E=1.2e-20 PF00723: Glyco_hydro_15" amino acids 227 to 591 (365 residues), 240.4 bits, see alignment E=3.6e-75

Best Hits

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.3

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YNC2 at UniProt or InterPro

Protein Sequence (610 amino acids)

>CA264_02430 glucoamylase (Pontibacter actiniarum KMM 6156, DSM 19842)
MKDYHSIEDYGLIGNLHTTALVSKTGSIDYLPFTRCDSPTVFAAILDNENGGYWRISPEN
GDVRYKQQYLPDTGILLTRFLAKDGIAELTDFMPVRKSKERGALVRELKVIKGKLRIRMD
CRPRMNYARSGHTVEWQDDVAIISSNGDDGTCFRFMSSVAVEEQDGNLSGCWELKQGDRI
SFVIESMHNATAFEQKDLDYFTQIAFHDTVNFWQTWVEESNYEGRWHEMVLRSAITLKML
TSYEFGSTIAAATFSLPEAIGSIRNWDYRYTWIRDAAFTMSSFLRLGFLSEAGQFIDWLM
RRCEEIQEASDLQLMYAVDGTSNLTEQVLDNLKGYKGSSPVRIGNKAFRQFQLDIYGELI
QTIYLYDRHGGPVTFESWKHVQKFVDFVASNWQRKDHGIWEVRGNKEEFIHSKIMCWVAL
DRGIKLAQERSFPGPLDAWREVRDRIYLDVYENFWNEEKQAFVQYRGANVLDASVLIMPL
VGMFSPAEPRWQSTLKAIEENLTTGSLVYRYNLSSNVDNLPGDEGTFCLCSFWYIESLAV
AGDLQKARLYFEKMLGYSNHLGLYSEQVGLQGQLLGNFPQAFTHLALISAALELNLSLSD
LQSRQPRRPA