Protein Info for CA264_02070 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: LLM class flavin-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 173 to 194 (22 residues), see Phobius details TIGR03558: luciferase family oxidoreductase, group 1" amino acids 15 to 334 (320 residues), 448.7 bits, see alignment E=6.2e-139 PF00296: Bac_luciferase" amino acids 25 to 310 (286 residues), 134.5 bits, see alignment E=2.7e-43

Best Hits

Swiss-Prot: 58% identical to YVBT_BACSU: Uncharacterized protein YvbT (yvbT) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 63% identity to phe:Phep_2368)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YNC3 at UniProt or InterPro

Protein Sequence (343 amino acids)

>CA264_02070 LLM class flavin-dependent oxidoreductase (Pontibacter actiniarum KMM 6156, DSM 19842)
MSNNKQKKLNDIPASVLDLVHILSGQTAADSFPNSLDLARHVEKWGFERYWMAEHHNMPG
IASSATSVLIGYIAGGTSSIKVGSGGIMLPNHAPLVVAEQFGTLASLYPNRIDLGLGRAP
GTDQQTAMALRRNIGSAGEDFPTNVKELQQYLSADNQTSRVRAVPGEGLNIPLWILGSST
FGAQLAGILGLPYAFASHFAPASLQVALKVYRESFQPSEQLQEPYAMACVNVIAADTDEQ
AIHLSTTLYQSFLNVIRGKALPLQPPVDSMASLWDANERYAVNQMLRYSFVGSPATVKEE
LQAFLDETQVDEIMVASAMYDHQARLRSYEILSDLFKPAGKTA