Protein Info for CA264_01870 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 29 to 57 (29 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 146 to 170 (25 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 249 to 274 (26 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 30 to 283 (254 residues), 153 bits, see alignment E=6.2e-49

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 34% identity to fjo:Fjoh_2469)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YN71 at UniProt or InterPro

Protein Sequence (299 amino acids)

>CA264_01870 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MVKKLKHFFTNTWEILKYSRRNFLQGEPIVYSAAIAFFTIFSLPAILIILMFAGSIFFSE
STVRSQLVKEVESLVSEQASTQVSSILENAVEAPTGFWGITIGLVIIIQSSTITFFIIQK
ALNAVWQVRTKPGVGLVQLLKNRLSALAMVANLGLLFALSLLFDTLVAMLGDQLRMLLEE
HFSSTIQVVNTVFYLTIVYVFFTAILKILPDVKVPWKDALMGGAITSLLFLIGKQIINFL
LGRMVISGIYAAAGSLVILLLWVFYSSVILLLGAEVTKAYAHNRGREVQPKPIATKYEK