Protein Info for CA264_01730 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: NADH-quinone oxidoreductase subunit L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 714 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 55 (19 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 121 to 138 (18 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 297 to 297 (1 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 354 to 377 (24 residues), see Phobius details amino acids 406 to 428 (23 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details amino acids 502 to 521 (20 residues), see Phobius details amino acids 564 to 585 (22 residues), see Phobius details amino acids 658 to 677 (20 residues), see Phobius details amino acids 696 to 713 (18 residues), see Phobius details TIGR01974: proton-translocating NADH-quinone oxidoreductase, chain L" amino acids 11 to 652 (642 residues), 568.4 bits, see alignment E=1.3e-174 PF00662: Proton_antipo_N" amino acids 78 to 122 (45 residues), 61.9 bits, see alignment 4.3e-21 PF00361: Proton_antipo_M" amino acids 139 to 444 (306 residues), 257.7 bits, see alignment E=1.3e-80

Best Hits

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YN56 at UniProt or InterPro

Protein Sequence (714 amino acids)

>CA264_01730 NADH-quinone oxidoreductase subunit L (Pontibacter actiniarum KMM 6156, DSM 19842)
MAGTPETATALVVLLLPLLGFLILYPFGKRFPRHGDWLSIGLTAIAFILSAWLFTQTWNT
ATYHSRVTWFSLPGSSLTHFTAGVLLDNLTVLMLFIVTFISLLVQLFSVGYMHGDRGYSR
YFAYLGLFTFSMLGIVLVDNLLLLFMFWELVGLSSYLLIGFWFKKPAAVAANKKAFLINR
IGDIGLLLGLFAFYTYFRTFDLETLRLLIGNGTWDSGSFIATYTLNGQDWQVELGPIFLT
MAGLGLFMGCVGKSAQFPLQVWLPDAMQGPTPVSALIHAATMVAAGVYLVARCYAFFTPQ
ALVVIAVVGAVTALVGALVALTQNDIKAVLAFSTISQLGYMVMGMGTGAHDAALFHLATH
AFFKAALFLNSGIIIHAMHRGLHRHHLHLDAQDIRNMGGLRKAMPLTFYTYLLATAALVG
LPLFSGFLSKDAILSGSWAWAQTMSAHGSSFLYIVPIIGFTVVLLTAFYMARHMWFIFFG
EFRAPFSVQDLRLKVGQEVEHVMALPVILLAILSLGIFFSLNPLNFGSSWLMQGISLDKL
NGSAILSGALLQAVKAQDAANHTLHIVFGVLSTLLGIAGISWAILKYKSRSSQQLQQEAP
RSRIAVLSHNHFRLNELYHKAFVQPTLLLGKGLYRTDKRVIDYTLDNGSKILVILAKIVA
WFDRWVVDGLVWLVGALSKVLGRVGRGFQNGKVQSYYAYSLFGFILLLLYIILF