Protein Info for CA264_01640 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF04851: ResIII" amino acids 6 to 172 (167 residues), 42.8 bits, see alignment E=8.2e-15 PF00270: DEAD" amino acids 7 to 176 (170 residues), 168.4 bits, see alignment E=1.8e-53 PF00271: Helicase_C" amino acids 211 to 318 (108 residues), 98 bits, see alignment E=5.9e-32

Best Hits

Swiss-Prot: 38% identical to RHLE_ECOLI: ATP-dependent RNA helicase RhlE (rhlE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 57% identity to sli:Slin_1766)

MetaCyc: 38% identical to ATP-dependent RNA helicase RhlE (Escherichia coli K-12 substr. MG1655)
5.6.2.e [EC: 5.6.2.e]

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.6.2.e

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXR2 at UniProt or InterPro

Protein Sequence (472 amino acids)

>CA264_01640 DEAD/DEAH box helicase (Pontibacter actiniarum KMM 6156, DSM 19842)
MGYNQPTPVQEQAIPLILEQKDLIACAQTGTGKTAAYLLPLIDRISHEGYEHTSTLILVP
TRELAKQIDEQVEGFGYFASVSSIAIYGGNKGDDWEQQKRALTTGADIIIATPGRLLSHM
AMGYVKLNQLNHLVLDEADKMLDMGFMDDLIKIISQLPKQRQTLLFSATMPRKIRDLAQQ
ILQQPAEVNLAISKPAEGIDQRFYLTYDNQKLPLLEYLLRELDVQSMIIFTSRKSNVSQI
VRSLKKMGFTAEGISSDMTQDEREKALQGFKNKQYQIVVATDILSRGIDIDSLSHVVNFD
MPQDAEDYVHRVGRTARAASTGMAITFVNEKDMFRVQKVERLIERELPKLPLPGDFGPGP
AYDPTRRDGGSQRQRGGGRPGTGNKGSKNRSKHHRGPKPEGNGAARTDEAQANRPKREAN
PRPPRAEGQAAGEQQGEGRNKSRNRNRNRNRKSNKPQNAQGSPNPQVSQDNS