Protein Info for CA264_01265 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: 50S ribosomal protein L9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 PF01281: Ribosomal_L9_N" amino acids 1 to 45 (45 residues), 80.5 bits, see alignment E=5.1e-27 TIGR00158: ribosomal protein bL9" amino acids 1 to 147 (147 residues), 132.2 bits, see alignment E=1e-42 PF03948: Ribosomal_L9_C" amino acids 64 to 146 (83 residues), 88.9 bits, see alignment E=2.4e-29

Best Hits

Swiss-Prot: 63% identical to RL9_CYTH3: 50S ribosomal protein L9 (rplI) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02939, large subunit ribosomal protein L9 (inferred from 63% identity to mtt:Ftrac_0278)

Predicted SEED Role

"LSU ribosomal protein L9p" in subsystem CBSS-262719.3.peg.410 or Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YMW6 at UniProt or InterPro

Protein Sequence (147 amino acids)

>CA264_01265 50S ribosomal protein L9 (Pontibacter actiniarum KMM 6156, DSM 19842)
MEVILKDDVKGLGYKNDIVEVKPGYGRNYLIPQGLAVIADKSSRKVVAENIRQAAHKAEK
IQNDAQELANSIGAITLELPAKVGETGKIFGSVTTNQLSEALKAKGFDVDRKRISFDQDV
KTAGDYTATLNLHKEVKHQVNFTVVAE