Protein Info for CA264_00635 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: pyridoxal phosphate-dependent aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF01041: DegT_DnrJ_EryC1" amino acids 4 to 356 (353 residues), 350.4 bits, see alignment E=2e-108 PF01212: Beta_elim_lyase" amino acids 23 to 153 (131 residues), 27.3 bits, see alignment E=3.3e-10

Best Hits

Swiss-Prot: 55% identical to EPSN_BACSU: Putative pyridoxal phosphate-dependent aminotransferase EpsN (epsN) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 59% identity to tra:Trad_2126)

Predicted SEED Role

"Lipopolysaccharide biosynthesis protein RffA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YMH4 at UniProt or InterPro

Protein Sequence (363 amino acids)

>CA264_00635 pyridoxal phosphate-dependent aminotransferase (Pontibacter actiniarum KMM 6156, DSM 19842)
MGGHEKNYVQKALEDNWVTTAGPNLPGFEHDICQHTNSRHAVALSSGTATIHLALRVLGV
QPGDEVLCSTFTFVASANPILYLGAQPVFVESEPDTWNMCPETLHKAIASRLRLGKRPAA
ILLVHLYGMPAKMKEIMAVAQEFGIPVVEDAAEALGSRYGGHQVGTFGRIGVFSFNGNKI
ITTSGGGALITEDEQLAEQARFLSTQAKDPAPYYQHSQMGYNYRMSNISAGIGRGQMEVL
EKRVKQRREIHTFYRNQLGHIEGLEFLPEPKACFSNRWLTTVLLPAPHTPESIRLALEEE
NIETRPLWKPMHLQPLFEHHPYEGDNLSGKLFERGLCLPSSSSLTDEELDKVVKHLKRLL
EVT