Protein Info for CA264_00445 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13432: TPR_16" amino acids 36 to 95 (60 residues), 31 bits, see alignment 4.4e-11 PF07676: PD40" amino acids 282 to 315 (34 residues), 15.5 bits, see alignment (E = 2.1e-06) amino acids 335 to 368 (34 residues), 18 bits, see alignment (E = 3.3e-07) amino acids 385 to 423 (39 residues), 15.2 bits, see alignment 2.6e-06 PF00691: OmpA" amino acids 554 to 649 (96 residues), 81.4 bits, see alignment E=8e-27

Best Hits

Predicted SEED Role

"18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YMD0 at UniProt or InterPro

Protein Sequence (663 amino acids)

>CA264_00445 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MNYLAKSFSRVSLLLLMVCLLSASASAQSTRKLLRTANKLFDRENYRDALPYYEQVLAAD
PDNAKALYYAGISYLTFDKEKAADYLYRAQKLKPNVDRELEYWLGRADHINYRFDSAIDH
FQTYQKDIPKRNVERKEEVAQLIQYAKNAKREVANPKDVFVKNLGGDVNSNYSEHSPVIS
SDYNYLLFTSRSENVTGGKEARDGEYFEDIFETTRTGEDSWAEPRVVPGALNSAGHDASI
QLFDNDTKLLLYQSVNNGDIMVSERQPDGTWGTPKSISDKVNTKDFESDAYITPDGKTLF
FSTSHYSENGDLDIYSITRNNNGSWGNPKSLGKTINTAFDDDSPYLAADGTLYFASRGHN
SMGGYDIFAAKYDSVARRWARPVNLGSPINTPDDDTYYRLAPDGSYAYLSSYRIGGYGEK
DIYTINYIRNATVEGQVFTQNDSIALPGVELIFNGLQADKRPISYRDVTKPDSANYNVSL
LSGRPYQVQLSLDGEVVETEEFEVPVVLDDTSKITKNFYITLDDSTVARIAKVSPDALRS
GTGVSANVQMENLYFATDEYELRPESVQELDRIAAIMKANPTLNISIEGHTDSRASDSYN
MTLGQNRADAAFDYLVSKGISPKRMVTVTYGESRPAVPNTSAENMQLNRRTMFKVLPREN
QNQ