Protein Info for CA264_00185 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1064 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1064 (1041 residues), 798.7 bits, see alignment E=1e-243 PF13620: CarboxypepD_reg" amino acids 25 to 96 (72 residues), 40.3 bits, see alignment 5.2e-14 PF13715: CarbopepD_reg_2" amino acids 26 to 108 (83 residues), 68.1 bits, see alignment 8.3e-23 PF07715: Plug" amino acids 118 to 223 (106 residues), 72.1 bits, see alignment E=7.9e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 199 to 229 (31 residues), 63.5 bits, see alignment (E = 1.2e-21)

Best Hits

KEGG orthology group: None (inferred from 56% identity to cpi:Cpin_6566)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YM89 at UniProt or InterPro

Protein Sequence (1064 amino acids)

>CA264_00185 SusC/RagA family TonB-linked outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRRVLLLSFAMVLTLLQQVYAQSRTVSGTVTDQGTSQGLPGVAVIVKGTTVGTTTGVDGT
YSINVPANGNTLIFRFIGYKTVEREIGSAATINVNLGVDDKQLEEVVVVAYGTADKGSFT
GSATQISAEKIAQRPVTNITNAIAGQAAGVQTNSGSGQPGAGPEIRIRGIGSINSSNDPL
YVVDGTPYPGSIANLNVDDIESISILKDASSTALYGARATNGVVMITTKKGKKGSNQLNV
KISQGVSERAIKEYDRVNAYEYYPLIWEAQRNSLVNAAKDPYSLEDANQIASGLKKLRDG
KDGSVKGILGYNPFNVANDAIVDANGNINPEAKLLYDDVDWFEPLQRSGSRSDYALNYSG
GSEKSDYFVSLGYLKEKGYVIRSDYERFTGRVNVNTQATDWLRTGLNVSGTITESNQAST
SSSSSYVNPFNFARGIGPIYPVYAHDPSTGAYLLDEDGNRIYDYGNLSNLGLPNRGSNAS
VGRHIVAETMWNDNLYNRNVLSARTFGEVKFLQDFKFTTNLSVDIANYLAAEYDNNKVGD
GAPAGRASRTSTTATTYNINQLLNYSKTFNDRHFVEALVGHENYSYDYKYMYGMRQGVIV
EDNTELGNFTTTNSLDSRTDKYRVESYLSRLNYTFDDKYTLSGSYRRDGSSRFAKDVRWG
DFWSVGASWRLDRETFISMPEWVNMLKLRGSYGEVGNDALLNSDGTDRYYGYQELYTLGM
NNAKEPGFLQQDVLGSANLLWESNNSFDIGVEFDLFNRVSGSVEYFNRESENLLFRVPLP
LSSGVKEKWENIGTMANTGVEVQLSTDAVKTQDFTWNVNLNVSTFKNELKKLPQEEVITG
TKKYMVGKSIYDYWLRDWYGVDPADGAGLFATDTWVEGKTRVINGDTVTTDSNGAKYHYA
GSAIPDFAGGITNTFTYKNLSLSVLLTYQVGGKVYDANYASLMNAGTQGGALHKDILNRW
QQAGDETDVPRMDLTTATHYNAQSDRWLIDASYLNIRSVNLNYVLPSELTSKVFLKNASV
FASGENLALFSKRDGMNVNQSYSGVTSNSYIPARVYTVGLNVTL