Protein Info for CA264_00040 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07676: PD40" amino acids 242 to 280 (39 residues), 12 bits, see alignment 1.7e-05 amino acids 296 to 328 (33 residues), 11.8 bits, see alignment (E = 2e-05) amino acids 350 to 388 (39 residues), 19.6 bits, see alignment 6.9e-08 PF00691: OmpA" amino acids 550 to 645 (96 residues), 62.6 bits, see alignment E=3.6e-21

Best Hits

KEGG orthology group: None (inferred from 51% identity to chu:CHU_2993)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXP2 at UniProt or InterPro

Protein Sequence (657 amino acids)

>CA264_00040 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKRLFLLTPFLLALLHFVPLQAQQYKHVELNQPEKGLQVKKVQPNPELHLDFPNLNKIPY
YHDRKQLALIQKLEKRRQYDKVLPLLEGYVHRFGIQNFYTDTSLLWRLAQLLERQGNTEK
AKALYRLVLKHHRTDVRRVKSYYDSLEQNTKDYYVPLDYYYELVEYRKSIVSFKPPKGVY
LNMGNAINSPYADYGPTLSDENELFIYTSKRHVDDLKNRSNEDLFYSKQNNGFWEEAQSF
GKPINSIYNEGSGCLSRDGNTLYFARCEAPDGYGNCDIYVATRQSDGSWGQIQNLGANVN
SPAWDSQPTLSKQEDTLYFASDRLGGFGLSDIYYTHKDGSGKWAPARNMGPVINTRESEV
SPFLHPKYQVLYFSSRGQLNNFGDFDIYKTYEVQGHWQEPRNIGPLVNGRGSEYYFTIDG
ASRNLYYARSEADDLQNLDLYSFPLPMEAHPLAVTKVEGTLTDSVTHKPLSGVISIIDME
NGIEISSKYIRPDGSFEFDLIDDTRYMILIQSPDFFTIERELDLRGDASLQVMTSVIDYS
IPLVFQNIEFDQNQSAIKPEMEAVLDEVAYFMIDHPTYRLEIAGHTDGAGDPDFNLSLSQ
DRADAIKRYIERKVNIEDTRIDAIGYGSRKPIREEHTEEDRRINRRVEFIVTKPKKQ