Protein Info for BNILDI_22530 in Escherichia coli ECRC62

Name: priC
Annotation: primosomal replication protein N''

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 PF07445: PriC" amino acids 9 to 173 (165 residues), 175.6 bits, see alignment E=4.3e-56

Best Hits

Swiss-Prot: 99% identical to PRIC_ECOLI: Primosomal replication protein N'' (priC) from Escherichia coli (strain K12)

KEGG orthology group: K04067, primosomal replication protein N'' (inferred from 99% identity to eco:b0467)

MetaCyc: 99% identical to primosomal replication protein N'' (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Primosomal replication protein N prime prime" in subsystem DNA-replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>BNILDI_22530 primosomal replication protein N'' (Escherichia coli ECRC62)
VKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL
RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER
RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR