Protein Info for BNILDI_20145 in Escherichia coli ECRC62

Name: ssuE
Annotation: NADPH-dependent FMN reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF03358: FMN_red" amino acids 1 to 141 (141 residues), 121.6 bits, see alignment E=2.2e-39 PF02525: Flavodoxin_2" amino acids 1 to 92 (92 residues), 29.4 bits, see alignment E=6.6e-11 TIGR03567: FMN reductase" amino acids 2 to 171 (170 residues), 244.5 bits, see alignment E=2.9e-77

Best Hits

Swiss-Prot: 100% identical to SSUE_ECOLI: FMN reductase (NADPH) (ssuE) from Escherichia coli (strain K12)

KEGG orthology group: K00299, FMN reductase [EC: 1.5.1.29] (inferred from 100% identity to eco:b0937)

MetaCyc: 100% identical to NADPH-dependent FMN reductase (Escherichia coli K-12 substr. MG1655)
RXN-12444 [EC: 1.5.1.38]

Predicted SEED Role

"FMN reductase (EC 1.5.1.29)" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization (EC 1.5.1.29)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.5.1.29

Use Curated BLAST to search for 1.5.1.29 or 1.5.1.38

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>BNILDI_20145 NADPH-dependent FMN reductase (Escherichia coli ECRC62)
MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTF
TEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYA
LKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTRLDTALETFWQALHRRDVQVP
DLLSLRGNAHA