Protein Info for BNILDI_16095 in Escherichia coli ECRC62

Name: ydjE
Annotation: Inner membrane metabolite transport protein YdjE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details amino acids 327 to 345 (19 residues), see Phobius details amino acids 351 to 375 (25 residues), see Phobius details amino acids 388 to 410 (23 residues), see Phobius details amino acids 416 to 437 (22 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 403 (376 residues), 123.5 bits, see alignment E=9.6e-40 PF00083: Sugar_tr" amino acids 55 to 450 (396 residues), 125 bits, see alignment E=4e-40

Best Hits

Swiss-Prot: 100% identical to YDJE_ECOLI: Inner membrane metabolite transport protein YdjE (ydjE) from Escherichia coli (strain K12)

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 100% identity to eco:b1769)

Predicted SEED Role

"Putative transport protein YdjK, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>BNILDI_16095 Inner membrane metabolite transport protein YdjE (Escherichia coli ECRC62)
MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNA
AFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLM
GTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFL
LGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSIRLPPLTSYQS
NSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSIL
MTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMI
FFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFM
VLGVMLLLCALVLSIFGIETRKVSLEEISEVN