Protein Info for BNILDI_15565 in Escherichia coli ECRC62

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 107.7 bits, see alignment E=1.1e-34 PF17912: OB_MalK" amino acids 241 to 296 (56 residues), 50 bits, see alignment 6.8e-17 PF08402: TOBE_2" amino acids 290 to 363 (74 residues), 23.3 bits, see alignment E=8.3e-09

Best Hits

Swiss-Prot: 54% identical to MSMX_BACSU: Maltodextrin import ATP-binding protein MsmX (msmX) from Bacillus subtilis (strain 168)

KEGG orthology group: K10112, maltose/maltodextrin transport system ATP-binding protein (inferred from 100% identity to eoj:ECO26_2703)

Predicted SEED Role

"Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)" in subsystem Maltose and Maltodextrin Utilization (EC 3.6.3.19)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.19

Use Curated BLAST to search for 3.6.3.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>BNILDI_15565 sugar ABC transporter ATP-binding protein (Escherichia coli ECRC62)
MAAVILRKVEKIYDNGFKAVHGIDLDINDGEFMVFVGPSGCAKSTTLRMIAGLEDVSGGE
IYISDRLVNTLPPKDRSIAMVFQNYALYPHKTVFDNMAFGLKMQKRPKEEIKKIVEEVAE
KLEISDLLYRKPKEMSGGQRQRVAVGRAIVRKPDVFLFDEPLSNLDAKLRVSMRVKIAQL
HQSLKDEGHPATMIYVTHDQIEALTLGDRICVLNQGRIMQVDTPVNLYNHPANRFVAGFI
GSPSMNLIDAVVREEDGKLYIDIAKNIRLYIPENKQSVLKAYIDKPVCFGIRPEHISLSV
NCKEMNTVTGALSIIENMGSEKYLYFTVNNKEFIAKVNDQSITTADIGKNLYFNLDTSFC
HIFDFYTEENLTNYL