Protein Info for BNILDI_14435 in Escherichia coli ECRC62

Name: baeR
Annotation: two-component system response regulator BaeR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00072: Response_reg" amino acids 13 to 122 (110 residues), 89.2 bits, see alignment E=2e-29 PF00486: Trans_reg_C" amino acids 156 to 231 (76 residues), 82.9 bits, see alignment E=1.4e-27

Best Hits

Swiss-Prot: 99% identical to BAER_ECOLI: Transcriptional regulatory protein BaeR (baeR) from Escherichia coli (strain K12)

KEGG orthology group: K07664, two-component system, OmpR family, response regulator BaeR (inferred from 99% identity to eco:b2079)

Predicted SEED Role

"Response regulator BaeR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>BNILDI_14435 two-component system response regulator BaeR (Escherichia coli ECRC62)
MTELPIDENTPRIMIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL
DLMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR
VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF
SREHLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV