Protein Info for BNILDI_13155 in Escherichia coli ECRC62

Annotation: DUF2544 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF11245: DUF2544" amino acids 28 to 255 (228 residues), 255.8 bits, see alignment E=2.1e-80

Best Hits

Swiss-Prot: 47% identical to YFCO_ECOLI: Uncharacterized protein YfcO (yfcO) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to ssn:SSON_2390)

Predicted SEED Role

"Uncharacterized protein YadU in stf fimbrial cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>BNILDI_13155 DUF2544 domain-containing protein (Escherichia coli ECRC62)
MSASFDSVRVYYAMDKVTGAVASSVFNVTVITPKEVAYGKYDSFAYKGDTLRVISWSGSG
SAPTLVLTDFDTINNSNCPGIDTKIFRCAYMTFKITVASDDYGCPWIASFYSYTDLPGFG
SYTAPTVHNTICPTIPVASYDISWSENYVSHNKALRIQSTGSTVTTTLSTYLMEGGRLCD
GSNFSDNDGRGAYCRAVSELLTFTSYGCDKSTVTVTPTRHPVTDKVLHDIVVNVNTSSGQ
PIDSTCRFQYVLNEL