Protein Info for BNILDI_06580 in Escherichia coli ECRC62
Name: phnH
Annotation: phosphonate C-P lyase system protein PhnH
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 98% identical to PHNH_ECOLI: Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (phnH) from Escherichia coli (strain K12)
KEGG orthology group: K06165, PhnH protein (inferred from 98% identity to eco:b4100)MetaCyc: 98% identical to carbon-phosphorus lyase core complex subunit PhnH (Escherichia coli K-12 substr. MG1655)
Predicted SEED Role
"PhnH protein" in subsystem Alkylphosphonate utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (194 amino acids)
>BNILDI_06580 phosphonate C-P lyase system protein PhnH (Escherichia coli ECRC62) MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPLNIATTSVLLTLADNDT PVWLAAPLSNDIVSQSLRFHTNAPLVSQPEQATFAVTDEAISSEQLNALSTGTAVAPEAG ATLILQVASLSGGRMLRLTGAGIAEERMIAPQLPECILHELTERPHPFPLGIDLILTCGE RLLAIPRTTHVEVC