Protein Info for BNILDI_06275 in Escherichia coli ECRC62

Annotation: SopA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF13599: Pentapeptide_4" amino acids 12 to 86 (75 residues), 32.2 bits, see alignment E=1.5e-11 PF13981: SopA" amino acids 130 to 262 (133 residues), 175.9 bits, see alignment E=6.9e-56

Best Hits

Swiss-Prot: 95% identical to YJBI_ECOLI: Putative protein YjbI (yjbI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eck:EC55989_4530)

Predicted SEED Role

"YjbI protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>BNILDI_06275 SopA family protein (Escherichia coli ECRC62)
VIFIKASGECVDFSKNILDTVDFSQSQLTQSNFREYQIRNSNFDNCYLYASHFTRAEFLS
AKEISFIKSNMTAVMFDHVRISTGNFKDCITEQLELTIDYSDIFGNEDLDGYINNIIKMI
DTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKTFSHCPYIKDPIIRSYIHSGED
NKFDDFMRQHRFSKVDFDTQQMIHFINRFNMNKGLIDKNNNFFIQLIDQALRSTDDMIKA
NAWYLYKEWIRSDDVSPIFIETEEKLRTFNTNKLTRNDNIFILFSSVDDGPVMVVSSQRL
HDMLNPTKDTNWNSTYIYKSRHEMLPVNLTQETLFSSKSHGKYALFPIFTASWRAHRIMN
KGV