Protein Info for BNILDI_05840 in Escherichia coli ECRC62

Name: yijD
Annotation: YijD family membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 51 (16 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details PF07226: DUF1422" amino acids 3 to 114 (112 residues), 178.4 bits, see alignment E=2e-57

Best Hits

Swiss-Prot: 100% identical to YIJD_ECOLI: Inner membrane protein YijD (yijD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3964)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (119 amino acids)

>BNILDI_05840 YijD family membrane protein (Escherichia coli ECRC62)
MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE