Protein Info for BNILDI_05675 in Escherichia coli ECRC62

Name: rhsA
Annotation: Uncharacterized conserved protein RhaS, contains 28 RHS repeats

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1365 PF20148: DUF6531" amino acids 46 to 123 (78 residues), 63.6 bits, see alignment 3.5e-21 TIGR01643: YD repeat (two copies)" amino acids 343 to 377 (35 residues), 17.1 bits, see alignment (E = 6.1e-07) amino acids 409 to 444 (36 residues), 18.6 bits, see alignment (E = 2e-07) amino acids 489 to 511 (23 residues), 18.4 bits, see alignment (E = 2.5e-07) amino acids 575 to 612 (38 residues), 31.4 bits, see alignment (E = 1.9e-11) amino acids 637 to 678 (42 residues), 24.3 bits, see alignment (E = 3.4e-09) PF05593: RHS_repeat" amino acids 361 to 392 (32 residues), 23.6 bits, see alignment (E = 1.1e-08) amino acids 450 to 482 (33 residues), 24.1 bits, see alignment (E = 7.8e-09) amino acids 489 to 511 (23 residues), 24.9 bits, see alignment (E = 4.3e-09) amino acids 534 to 568 (35 residues), 28.4 bits, see alignment (E = 3.6e-10) amino acids 575 to 611 (37 residues), 37.8 bits, see alignment (E = 3.9e-13) amino acids 617 to 652 (36 residues), 23.8 bits, see alignment (E = 9.8e-09) amino acids 637 to 674 (38 residues), 38.9 bits, see alignment (E = 1.8e-13) PF03527: RHS" amino acids 1123 to 1151 (29 residues), 31.6 bits, see alignment (E = 2.2e-11) TIGR03696: RHS repeat-associated core domain" amino acids 1141 to 1218 (78 residues), 82 bits, see alignment 3.5e-27 PF14220: DUF4329" amino acids 1233 to 1352 (120 residues), 54.9 bits, see alignment E=1.8e-18

Best Hits

Swiss-Prot: 98% identical to RHSA_ECOLI: Protein RhsA (rhsA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to eck:EC55989_4415)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1365 amino acids)

>BNILDI_05675 Uncharacterized conserved protein RhaS, contains 28 RHS repeats (Escherichia coli ECRC62)
MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
GPWWVLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHHEAAGEFSGEITGVTDG
AGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
EYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYR
YDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSV
TQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGP
DGLELRREYDESGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
SFTDCSGYQTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLTAVKDTQGHETRYEYNIAG
DLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVNGETAEQWQY
DERGWLTDISHISEGHRVTVHYGYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGL
ANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRRFGRYELTTAYTPA
GQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIP
YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTD
DERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
KPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGELARTQRRSLADTLQQ
SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLPLALISTEGATAWCAE
YDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGW
NLYTYPLSPVNSMDPLGLYEFKSKNIDDIGIFALAMCNGESINENKEYGGLICKKQGEYF
PMNPISSNDNDSVDLRNIKCPEGSERVGDYHTHGFYSDDKGNKVTKENDVYDSLNFSSKD
LTNSYMNGMGKKEYSSYLGTPNNTYLKYNPKAKGNGVTIIRQGSN