Protein Info for BNILDI_04985 in Escherichia coli ECRC62

Name: xerC
Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF02899: Phage_int_SAM_1" amino acids 8 to 90 (83 residues), 91.3 bits, see alignment E=3.8e-30 TIGR02224: tyrosine recombinase XerC" amino acids 9 to 296 (288 residues), 369.9 bits, see alignment E=5.1e-115 PF00589: Phage_integrase" amino acids 113 to 282 (170 residues), 193.9 bits, see alignment E=1.9e-61

Best Hits

Swiss-Prot: 100% identical to XERC_ECO8A: Tyrosine recombinase XerC (xerC) from Escherichia coli O8 (strain IAI1)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 100% identity to eco:b3811)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>BNILDI_04985 tyrosine recombinase XerC (Escherichia coli ECRC62)
MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTVVRNFA
VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN
RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP
IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH
KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK