Protein Info for BNILDI_01210 in Escherichia coli ECRC62

Name: cfaC
Annotation: colonisation factor antigen c, usher

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 894 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF16967: TcfC" amino acids 275 to 341 (67 residues), 70.5 bits, see alignment 6.8e-24 PF17271: Usher_TcfC" amino acids 350 to 762 (413 residues), 201.7 bits, see alignment E=1.8e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to eoj:ECO26_4198)

Predicted SEED Role

"Alpha-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (894 amino acids)

>BNILDI_01210 colonisation factor antigen c, usher (Escherichia coli ECRC62)
MDKKLLALLILASLSPAEATLTKIPAGFEVIAQGQQEYIEVYFSGKSLGKYYAMVNLDTV
TFLDPASLYNKLELDVDDQKIAHIVKEKLSQPLARHGELACGYVRTDSGCGFLNTDTLEI
IYNDEESSATLFINPQWNSAFDAKSLYLNPDKNTVNAFIHQQDINVLAQDDYQSLSIQGN
GALGITENSYIGAHWNFNGYDADDVSDSNADVSDLYYRYDFLRRYYVQAGRMDNRTLFNA
QGGNFTFNFLPLGAIDGMRIGSTLSYLNQAQSQQGTPVMVLLSRNSRVDAYRNEQLLGSF
YLNSGSQFIDTSSFPPGSYSVALKVYENNQLTRTELVPFTKTGGLTDGNAQWFLQAGKTT
SQVSDDESSAYQLGVRLPLHPQYELYAGLANADDVSAFELGNNWTADLGGVGNLAISASV
FRNDDGGKGDMQQANWSNPGWPTLGFYRTNSDGDACTTDSRESYNALSCYESISATVSQN
FVGWNMMLGYTRTQNNTDDSLRWDKQQSFENNYLRQTTAQSISETVQLSASRAFVMRDWI
LSTSVGVFHRNDNGGDNDDNGLYLSFSLSDTPAMDSNNNSHSTNVSTDYRYSEQDGDQTS
WQLSHTFYNDSFSHKELGVTVGGLNTDTINSAVNGRWDGQYGNVYATVSDSYDRKNHDHL
SAFTGTYSSTLAVSRYGVNLGASGTDDLLGAVLVDVKGFSEQDEESQDLQLEARVAGSRT
LQLGQSDSVLFPYPGFQSGFVEVNDSSQGNQQGTTNIINGAGNRELMLLPGKLRYREVSA
SFNYNYIGRLLLPAAVKKFPIVGLNSAMLLVAEDGGFTLEINGSEKELYLLSGQQFLKCP
LSVVKKRASIRYSGDVTCSVVTYSQLPESIQVQAQLKQPKLRGNVQTAQREVAP