Protein Info for BACOVA_05618 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 48 to 129 (82 residues), 61.7 bits, see alignment 8.1e-21 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 48 to 1082 (1035 residues), 841.5 bits, see alignment E=1.2e-256 PF13620: CarboxypepD_reg" amino acids 48 to 104 (57 residues), 40 bits, see alignment 6e-14 PF07715: Plug" amino acids 137 to 245 (109 residues), 73.1 bits, see alignment E=3.9e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 222 to 251 (30 residues), 56.5 bits, see alignment (E = 1.8e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1082 amino acids)

>BACOVA_05618 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MEIKSKFLCSKGVALAFAMLLGGSPGVLLYANDSVEESLMVVQTGRIIKGLVTDANGEPL
IGCNVVVIGSNAGVITDIDGRFTLNIPADAKQIKVSYIGYVDQIINLHGRSDFKVVLKED
NNALDEVVVVGYGTQKKATLTGAVEQIGSQVLESRAITNVGAALQGATPGLVVTRSSSRP
GNEGLNFQIRGLTSVNGGSPLIIVDGVPVLNSESFQNLNSDDIENISVLKDGSASIYGAK
AANGVILVTTKKGKGKTTVDYGFNMRFTTNGIMAFSPSMQEYASMWLEANKEMPEHDWWG
WGEENLKKMAQGIEGIYESTVADWGTMFVGNANRLDELFARRYSYQHNLSVAGSTDKSDY
RISLAYADNQANLATAYDGQKQLNLRLNYGIKLTDWFKLETLASMIKTNTETPTHGIDRT
LYGNDAPFFPAKNPYGQWYANFGNVGDRNAAAATTDGGRDEREKLTTRVDFKALVDIWKG
ITFEGTASFQNEEYRRERYSLPVQCYNWFGEQTAKLVYETTQTLSTPQDVLNFKDSHQPG
YLVQANNARYQYYSGLLKYKRTFAEVHNIDAMFGINAEKWVTKKVVTAREKFEDAGIYDL
NLATGTQGNGGGKTHNGTYSYIARLNYNYAEKYMVELMGRRDGNSKFAPGYRFKSFGSVS
LGWAFSEEQFVEFLKPVLSFGKLRLSYGSSGNDVGLGDYDYVSTVSLGTAGFGTIPANQV
SSGFGGLISYDRTWEKVSQKNFGIDLNFFDNRLKATFDYFIKDNTGMLVNVTYPGVLGGK
SPKTNSGHLNVKGWEFTIGWRDQIKDFSYYANFNIGDTKSLLKEMEGADSYGAGWNAAVN
GYPLNSYFLYRTDGYFKDQAEVDRYYALYGEGKEDLTGVGAGSASRLRPGDTKRLDLNGD
YKISGAGNENSDLQYLGDSNPHFVFGFTLGGSWKGIDVNAMFQGVGKQYVIRNDWMAYPF
QTRTANQNPTYLGKTWTESNPNAEFPRLTTNANLARWNYQNNDFMMQNNRYIRLKTLIVG
YTLPQIWTRKVKLEKVRVYFSGNDLWEATSIRDGFDPEMGAASNNSGYPFARTWSFGLNI
TL