Protein Info for BACOVA_05324 in Bacteroides ovatus ATCC 8483

Annotation: site-specific recombinase, phage integrase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 PF14659: Phage_int_SAM_3" amino acids 6 to 46 (41 residues), 32.2 bits, see alignment 1e-11 PF00589: Phage_integrase" amino acids 116 to 294 (179 residues), 99.5 bits, see alignment E=2e-32

Best Hits

KEGG orthology group: None (inferred from 68% identity to pmz:HMPREF0659_A7329)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>BACOVA_05324 site-specific recombinase, phage integrase family (Bacteroides ovatus ATCC 8483)
MIQKKTIKEISVLWKEDKKQYVKQSTFAAYVLILENHIYPTFGEMYELEENKVQEFALQK
INNGLSKKSIKDILIVLKMILKFGVKHGYLDYKEWEIRFPTEDEKQHLEVLSISHQKRIM
SFIQEHFTFKNLGIYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRH
TELIINTPKTKNSIREIPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKL
MKDLNIPELKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTTLDLYVHPNMEQKKKCI
DRMIKGLK