Protein Info for BACOVA_04964 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1016 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 28 to 1016 (989 residues), 673.7 bits, see alignment E=6e-206 PF07715: Plug" amino acids 117 to 221 (105 residues), 43.3 bits, see alignment E=2.4e-15 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 197 to 227 (31 residues), 51.1 bits, see alignment (E = 8.8e-18)

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1016 amino acids)

>BACOVA_04964 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MRKNKILILALLVCLSIPVRAQNTDNNIIGIVVDKSGNPVYGASVNVEGGAVETRVETDK
DGKFEIAVEKGQRLSVVSVDKGSTTVVAKTDGPMTIVMGYAAQTIDVGANRTFSRHESTA
AVSTTYNEEFNKRSSRNISNSLYGYGLGLTTLQNAASTGLMADPTFYVRGLQSLSSSTPL
VLVDGLERDMSLVSPEEVESVSILKDAAAVALYGYKGVNGAILITTKRGKYKTKEITFTY
DHIINTQSRRPEFVDAATYASAVNEARGYEGLGARYTPEEVDAFRNGVGSGGASRMYPYL
YPNVNWIDETFKDRGVSNKYTIEFRGGGAKFRYYTMANLLTDKGFIKTPNANDGYSTQNM
YSRANLRTNLDIDLTATTKLKLNLLGTLSESRIPGASVNLWDMIYSIPSAAFPVRTEDDS
WGGSTTWAGTSNPVAQSQGAAYSKGHSRSLFANLTLSQDLSGLLKGLGANFRLAYDNYSN
ILEDHSKTYTYAGYATSWTTNGPFYTAISGGESSEMGSGAGIDNWARQFNFAGSVDYNRS
FRKWDVYSQFKWDYEYRDSYGLNTTIYRQNVSWYNHVGFSNRYYLDLALVGSASSLLAPG
HKWAFSPTISAAWVLSEEKWLKDVSWVNFLKLRASFGVINVDYLPKDGSTTVYDYWDQIY
TTTGTQYKFNSSYDSEFGSTIIGRLATANSTHEKAYKYNVGVDAVLFNGLDVTAEGYYQR
RKDIWVSSEGKYTDVLGVDAPFENAGIVDSYGVELGLNYTKRLGDVVFNLGGNFAWNKNE
IKEQLEEPRLYKNLVQTGNRLGQVYGMVAEGFFKDKEDIANSLPQNFSTVVPGDIKYKDV
NGDGIIDANDKTAIGYSTTAPEIYYSFHLGAEWKGIGVDVMFQGTGNYSAVLNTKSMFWP
LINNTTLSTHYYENRWTPENQNAKYPRLSSQSNANNYQANTVWLADRSFLKLRNAEVYYR
FPEEWMKKTKILGSAKLYVRGTDLFCSDHIDVTDPECYGVATPLNKSVVVGVTIGF