Protein Info for BACOVA_04949 in Bacteroides ovatus ATCC 8483

Annotation: GDSL-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF13472: Lipase_GDSL_2" amino acids 169 to 324 (156 residues), 51.8 bits, see alignment E=1.5e-17 PF00657: Lipase_GDSL" amino acids 181 to 363 (183 residues), 35.7 bits, see alignment E=1e-12

Best Hits

KEGG orthology group: None (inferred from 91% identity to bth:BT_4150)

Predicted SEED Role

"rhamnogalacturonan acetylesterase" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>BACOVA_04949 GDSL-like protein (Bacteroides ovatus ATCC 8483)
MKTTIIGLLLLATASVNAQEKAQTYQLADAPRYSEETGYGYDLVATPEKGSKAPFFFSVR
VPDGNYQVTVRLGSKKQAGVTTVRGESRRLFIDNLATKKGQFVDETFIINKRNPRISEKE
SVRIKPREKAKLNWDDKLTLEFNGDAPVCQSISIKPADPSVITVFLCGNSTVVDQDNEPW
ASWGQMIPHFFGTDVCIANYAESGESANTFIAAGRLKKALSQIKKGDYLFMEFGHNDQKQ
KGPGKGAYYSFMTSLKTFIDEARARGAYPVLVTPTQRRSFDATGHIRDTHEDYPEAMRWL
AAKENVPLIDLNEMTRTLYEALGTETSKRAFVHYPAGTYPGQTKAFEDNTHFNPYGAYQI
AQCVIEGMKKAVPELAKHLKIDPSYNPAQPDDVNGFHWNESPFTEIEKPDGN