Protein Info for BACOVA_04911 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1085 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 31 to 1085 (1055 residues), 868.8 bits, see alignment E=7e-265 PF13620: CarboxypepD_reg" amino acids 32 to 101 (70 residues), 38.3 bits, see alignment 2.9e-13 PF13715: CarbopepD_reg_2" amino acids 33 to 114 (82 residues), 64.2 bits, see alignment 1.8e-21 PF07715: Plug" amino acids 122 to 228 (107 residues), 65.5 bits, see alignment E=1.2e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 204 to 234 (31 residues), 64.1 bits, see alignment (E = 7.8e-22) PF00593: TonB_dep_Rec" amino acids 424 to 826 (403 residues), 77.6 bits, see alignment E=3.7e-25

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1085 amino acids)

>BACOVA_04911 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MQRMSNKVKNMRSLLLILFSAISLSVSAQTITVKGNVKDTSGEPVIGASVVEKGNTTNGT
ITDLDGNFSIKVDGKKTLVISYIGMKTQEVAVQGRKTINVQMVDDSKALDEVVVIGYGTV
NKRDLTGSVASVSAKDLAAIPVASASEALTGKLAGVSVTTTEGSPDADIKIRVRGGGSLS
QDNSPLYIVDGFPVSSISDIAPSEIQSIDVLKDASSTAIYGARGANGVIIITTKSGKEGK
TQVDFGASFGFKQVTKLTEVLSPYDFVAYQREIGSLDYGNFADMDIWRSIDGTDYQDEMF
GRTGNQQQYNINVSGGTKQMTYSVSYAHNEEKSIMLNSGFKKDNVNAKIKSELNKWMTLD
FNARLSYSTIDGLGGGADTNESNAANSTVANATVFRPVDSLKYSDDDEENSSAQQKSPLE
RLLATDKTRNTFNQNYNVGLNWKPFKNWTFRSEFGYGWKFDDTEQYWGVDAVSNSKYGYN
GQPQAYLLREKTMSWRNANTLTYDNKKLFKGRDKLNVLIGHEVSSSQRKSIENVSVAFPV
TMNFDDMKANMGSGKALANQSTIAAKENILSFFGRVNYTMMDKYLLAVTVRADGSSKFGS
GNRWGVFPSAALAWRISDEAFMSNTQDWLSALKLRLSFGTAGNNRINSGLLSTTYSLGGN
DARNPFFNGESTTMLEHGTNLYNPDLKWETTVTRNIGIDYGFWNNRISGAIDFYWNTTRD
LLMRTEIPSLSGYNYQYKNFGQTSNKGVELSVSAVLFDKKNFSLNFNANIAYNRNRIDKL
NTDSPWQSSNWSGSTMAKYEDFRVEKGGRLGEVWGYKTNGYYTVYDPVTNPTGELVWAGS
EWGLKDGMQDNSPTITGGKYYPGGLKLECDKDGNPLKQRLGNTIAPTTGGFGFDGRVGNF
DFNVFFNYSLGNVIVNGTKLAASFRSGSRTGYNLNNDFRLSNRYTWIDPETGLNLSSSST
DVLNTYGDMTTAGLRLNEINANANMYNPASATTMQLTDYAVEKASFLRLNNITIGYSLPK
TIVRRAFMQNVRIYLTGYNLFCWTNYSGADPEVDTSSKKNAMTPGIDYAAYPKSRTFVGG
INVTF