Protein Info for BACOVA_04910 in Bacteroides ovatus ATCC 8483

Annotation: SusD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14322: SusD-like_3" amino acids 21 to 231 (211 residues), 61.8 bits, see alignment E=1.1e-20 PF07980: SusD_RagB" amino acids 388 to 633 (246 residues), 79.2 bits, see alignment E=4.4e-26

Best Hits

Predicted SEED Role

"SusD, outer membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>BACOVA_04910 SusD family protein (Bacteroides ovatus ATCC 8483)
MKIYKTLFLGLGLIALSSCSDFLNQTSPSELDNESTFNNAYYTELALNKVYGSLTQDQTY
SNFLPIIAGTNTDCELIDGLGTDASNTSSERGNMNYNANPGWSQLSKVWDAMYGVIENAN
LVVDGINNSQLIQQAGATRTSMMRFRAEAMTLRAMIYFDLIRLFGDIPFKTESSNSDLSN
VYIGKADRDDIMDELIIELEEAIGYLPWAGEDGYTTEHVSKGYAHALLANIAMTRAGYAI
REQAKDGYITGDNSDATYPTQRCSDTKRRELFELAEKHLAAVVSSGKHKLNPSVEEYWRL
INIGQLDQTYQENLFEIPMGLNKSGELGYTIGYRINGASSLFGPKGNSSGKLKLTAPYYL
SFGEGDIRRDLTCAISQLSTDKNTKVFKEYMLGNAPFGLYCGKWDYRKMMENSEWYAAVL
ASDQKVCSGINVVKMRYPQVLLMYAEVVNELYGKGATAEGCTLTATAALKEVHDRAFTDA
TKRDAAWTALMGKDFFDAIVDENAWELAGEGVRKFDLIRWNLLSEKIDEFKNEYTNAVYN
GTYPQYVNYKYRTDNPMYIDMTSLVFGAKVGGEYENKSFFGAETSDKEQKNLKVNLPSIS
GGLNKAVKNRYLLPIASTTISTSNGKLHNSYGYSD