Protein Info for BACOVA_04904 in Bacteroides ovatus ATCC 8483

Annotation: response regulator receiver domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1511 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 913 to 935 (23 residues), see Phobius details PF07494: Reg_prop" amino acids 35 to 58 (24 residues), 17.1 bits, see alignment (E = 1.7e-06) amino acids 80 to 103 (24 residues), 15.9 bits, see alignment (E = 4.1e-06) amino acids 455 to 472 (18 residues), 16.3 bits, see alignment (E = 3e-06) amino acids 555 to 577 (23 residues), 27.1 bits, see alignment (E = 9e-10) PF07495: Y_Y_Y" amino acids 840 to 904 (65 residues), 73 bits, see alignment (E = 5.1e-24) PF00512: HisKA" amino acids 952 to 1016 (65 residues), 59 bits, see alignment (E = 1.4e-19) PF02518: HATPase_c" amino acids 1064 to 1171 (108 residues), 74.3 bits, see alignment 3.8e-24 PF00072: Response_reg" amino acids 1238 to 1347 (110 residues), 84.2 bits, see alignment 2.5e-27 PF12833: HTH_18" amino acids 1429 to 1508 (80 residues), 62.5 bits, see alignment 1.4e-20 PF00165: HTH_AraC" amino acids 1469 to 1506 (38 residues), 42.6 bits, see alignment (E = 1.7e-14)

Best Hits

KEGG orthology group: None (inferred from 80% identity to bth:BT_4111)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1511 amino acids)

>BACOVA_04904 response regulator receiver domain protein (Bacteroides ovatus ATCC 8483)
MMKKTLISVILLLAIVFLTHAQQHCFFTHYSTEDGLSQNTVMNILQDHKDNLWFATWDGI
NRFNGYTFKTYKARQGNYISLTNNRVDRIYEDRYGFLWLLTYDNRVHRFDPKTETFEQVP
AAGEEGSAFNVHTIEVMPNGTVWLLTENDGAIRILTHPNENHRLTWDIYSSKTELFPSLH
VFKVHQDKAGNDWLLTDNGLGMIRPGKKEPDSYFTETKGKFGGINQAFYAVQERDKDICF
ASDHGRIWSYQKDSGEFTLIELPTKGQITSIHPVAPDVSVITTDSDGFFTYNLRTKTNVH
YSFLTCKALPAKPILSAYVDRSSEVWFEQEEPGVVAHFNPSTGVVTREQILIEYSNPERS
RPAFHIHEDVNGYLWVHPYGGGFSYFDPQKKRLVPFYNGLGSRDWRFSNKIHSAFSDKQG
NLWLCTHSKGLEKVTYRNVPFAMMTPMPHEHESLHNEVRALCEDKLGNLWVGLKDGMLRM
YDADKAYKGYLTESGIVSTTGTPMLGTVYFVIQDSKGIIWIATKGDGLVRAEPTSSNGMS
YKLTRYLHREEDMYSLSDNNVYCIYEDHYGRIWVATFAGGINYITQNEAGKTLFINHRNN
LKGYPIDPCYKARFITSDNNGRLWVGTTTGAVAFDENFKKPEDVQFYHFSRMPNDTQSLS
NNDVHWIISTKKKELYLATFGGGLNKLISISKDGHGEFKSYSVLDGLPSDVLLSAREDSK
ENLWISTENGICKFIPSEERFESYDERSITFPVRFSEAASTLTAKGSMLFGASGGVFIFN
PDSIRKSSYIPPIVFSKLMVTNEDITPGDNSLLKVDIDDTDPLVLSHKENIFSVHFAALD
YTNPQNIQYAYILDGFEKQWTFADKQRSVTYTNLPKGEYVLRVRSTNSDGVWVDNERILN
IVILPSFWETPVAYVLYVLFILIIILVAVYILFTIYRLKHEVSVEQQISDIKLRFFTNIS
HELRTPLTLIAGPVEQVLKNDKLPADAREQLVVVERNTNRMLRLVNQILDFRKIQNKKMK
MQVQRVDIVPFVRKVMENFEAVAEEHRIDFLFQTEKEHLYLWVDADKLEKIVFNLLSNAF
KYTPNGKMITMFIREDEKMVSIGVQDQGIGIAENKKKSLFVRFENLVDKNLFNQASTGIG
LSLVKELVEMHKATISVDSHLGEGSCFKVDFLKGKEHYDKEAEFILEDADAPARMGQVVD
IANSSIQSETLVSDDSEKIDDVYGEEFAKEENSKELMLLVEDNQELREFLRSIFSPMYRV
VEAADGKEGASKALKYLPDIIISDVMMPEKDGIEMTRELRADMTTSHIPIILLTAKTTIE
SKLEGLEYGADDYITKPFSATYLQARVENLLMQRKKLQSFYRDSLMHINISTGQEEVPVA
TDMPSAEEDVSETPPTTLEMSPNDRKFMDKLVELMEQNMDNGELVVDDLVRELAVSRSVF
FKKLKTLTGLAPIEFIKEMRIKRATQLIETGEFNMTQISYMVGINDPRYFSKCFKAQVGM
TPTEYRDRVGR