Protein Info for BACOVA_04840 in Bacteroides ovatus ATCC 8483

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details PF00892: EamA" amino acids 8 to 140 (133 residues), 89 bits, see alignment E=1.6e-29 amino acids 154 to 290 (137 residues), 61.9 bits, see alignment E=3.8e-21

Best Hits

KEGG orthology group: None (inferred from 92% identity to bth:BT_4051)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>BACOVA_04840 putative membrane protein (Bacteroides ovatus ATCC 8483)
MDKSKNLYGHLFALTANVMWGLMSPIGKSALQEFSPISVTTFRMVGAAAAFWILSMFCKQ
EHVNHQDMLKIFFASLFALVFNQGVFIFGLSMTSPIDASIVTTTLPIVTMVVAAIYLKEP
ITNKKVLGIFVGAMGALILIMSSQAGSNGNGSLIGDLLCLVAQISFSIYLTVFKGLSQRY
SAVTINKWMFIYASMCYIPFSYYDISTIQWTSVSTVAILQVLYVVLGGSFLAYLCIMTAQ
RLLRPTVVSMYNYMQPIVATIAAIAMGIGSFGWEKGIAIALVFLGVYIVTQSKSRADLEK
AEKPH