Protein Info for BACOVA_04540 in Bacteroides ovatus ATCC 8483

Annotation: peptidase, S54 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 transmembrane" amino acids 162 to 186 (25 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 249 to 266 (18 residues), see Phobius details amino acids 273 to 292 (20 residues), see Phobius details amino acids 302 to 320 (19 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details PF01694: Rhomboid" amino acids 206 to 343 (138 residues), 106 bits, see alignment E=9.8e-35

Best Hits

KEGG orthology group: None (inferred from 69% identity to bth:BT_1807)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (592 amino acids)

>BACOVA_04540 peptidase, S54 family (Bacteroides ovatus ATCC 8483)
MNVDRDRNMALKPSYNAKLYLPGLSNTEILILALEASQKLEWNIEEVTPEGIRFEVPFSI
RSHGEAITFTIEKGSDGEVSVRSQSSSVQFVDYGKNRKNIQKLRETMEEIKASLTPEELA
QRAKDFEEEFNRPLTEEEKAYIEEEKKRNSFLSFFIPRKGFIATPILIDINILVFIVMIA
SGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAFHLLMNMYAFMYVGLLLE
ELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLYGIFLAFLLFHRIAKEQR
KALLASILIFVGYNLVYGMKAGIDNAAHIGGLLSGFVLGIIYVVGYKFEKPDAQRTVSII
GELGIFCIFLFSFMILCKNVPPLYPEIRNEWESGIVEAYLNGELEEENENSNHSTVNATD
NLSSRKVPAYTPAGNDDTWLSYYDAATKFSCQYPTNWIKIAGAKGIIDGAEPPLLMLVNG
GNQLTITALTYDTQKEFEHMKELSLTLPRNAQGEPSEDYQLSNVNINGLPMTKITNPLHI
GAPDEPGEDVKQIALHYFQESKKRSFAIVMLVYDEEAETDLNAITSSIQITQ